Last April, the BioBam Team attended the Bio-IT World Conference & Expo in Boston and launched OmicsBox v.1.0. OmicsBox is BioBam’s latest offering, a bioinformatics software solution for the analysis of NGS data for different omics applications. OmicsBox provides four modules: The Functional Analysis module which includes the popular Blast2GO Functional Annotation software – BioBam’s flagship for functional genomics studies.
How to combine pairwise differential expression results with a functional annotation project in OmicsBox.
Once differential expression results are retrieved, it could be interesting to assign functional annotations to the differentially expressed genes and visualize the results in a single project. This is possible in OmicsBox.
BioBam Bioinformatics S.L. Supported Project. Researchers: Nahid Hosseinzadeh Gharajeh Mohammad Amin Hejazi Mostafa Valizadeh Ebrahim Dorani Background and Project Overview: Dunaliella is a unicellular, halotolerant, biflagellate microalga which is already exploited as a platform in food, feed, aquaculture, biomedical, pharmaceutical, nutraceutical and cosmeceutical industries, specifically due to its high production of β-carotene and fine chemicals. There is a wide range
Whole genome functional annotation of Solanum lycopersicum with OmicsBox functional annotation module.
We attended PAG XXVII, the largest Ag-Genomics Meeting in the world. https://www.intlpag.org/2019 We launched OmicsBox Beta and gave away a whole bunch of free subscription. Here a few pics of the happy winners! Hopefully, they took advantage. The PAG 2019 Team with our new OmcisBox Booth :-). See you next year!
This article explains how to export a GFF file with GO terms in Blast2GO.
One of the most common applications of RNA-seq is to estimate gene and transcript expression. It starts with the alignment or mapping of reads and there are two possible alternatives: mapping to the genome when a reference sequence is available or mapping to the transcriptome (e.g. de novo assembled transcriptome). Reads may map uniquely or could be multi-mapped reads, while
High-throughput sequencing of RNA has revolutionized the study of species for which a reference genome is not available or incomplete by enabling the large-scale analysis of their transcriptomes. While analyses of model organisms generally rely on a reference genome, studies of non-model organisms usually lack this advantage. In the absence of an appropriate reference genome, de novo transcriptome assembly is
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