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courtship song Laupala crickets

Zeroing in on genes involved in courtship song variation in Laupala crickets

OmicsBox Supported Project. Researchers: Hayden Waller, Cornell University, USA Background and Project Overview: One of the primary outcomes of speciation – the formation of new species – is the generation of pre-mating barriers that prevent or greatly reduce gene flow. Behavioral changes are perhaps the most potent in the early stages of speciation. In particular, the divergent evolution of sexual

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Clustering redundant transcripts in OmicsBox with CD-HIT

De novo transcriptome assemblies are required to analyze RNA-seq data from a species for which there is no reference genome. However, with the advancement of next-generation sequencing technologies, the amount of available sequencing data is growing exponentially. Because of this, assembly algorithms often generate a large number of transcripts. Removing redundancy from such data could be crucial for reducing storage space,

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Long-Reads Assembly with OmicsBox

Third-generation DNA sequencing technologies allows scientist to generate longer sequence reads, which can be used in whole-genome sequencing projects to yield better repeat resolution and more contiguous genome assemblies. However, although long-read sequencing technologies can produce genomes with long contiguity, the relatively high error rate of long reads has made it challenging to generate highly accurate final sequences. OmicsBox now

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OmicsBox Update Version 1.3

We are happy to announce that a new version of OmicsBox has now been released. OmicsBox provides now Long-Read support for DNA-Seq data analysis pipelines. Several new tools and updates improve the transcriptomics module and a new statistical package in the Metagenomics Module allow to identify functional differences among microbiome samples.

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Datura Metal

De novo transcriptome analysis in Datura metel and identification of genes related to withanolides biosynthesis pathway

BioBam Scholarship Supported Project – with OmicsBox. Researchers: Madhavi Hewadikaram Dr Sanjaya Deepal Bathige Prof. Veranja Karunaratne Project overview Withanolides are secondary plant compounds that belong to a family of C28 ergostane-type steroidal δ lactones that mainly belong to the family Solanaceae of the plant kingdom. Withanolides have held the interest and its importance in the scientific community owing to

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OmicsBox supports COVID-19 projects

COVID-19 Research Project in India with OmicsBox Support

BioBam Supported Project – with OmicsBox. Researchers: Dr. Abhishek Kumar, Computational Genome Biology Lab at Institute of Bioinformatics, Bangalore, India Project: The pandemic of coronavirus disease 2019 (COVID-19) caused by the novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pushed the entire world on a halt with the largest lockdown of our times. A total numbers of infected cases are

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OmicsBox supports COVID-19 projects

COVID-19 Research Project in the United Kingdom with OmicsBox Support

BioBam Supported Project – with OmicsBox. Researchers: Richard Lathe – Division of Infection Medicine, University of Edinburgh Medical School, Edinburgh, UK Project: In managing the COVID-19 pandemic there is an urgent need to understand why some people develop severe infection leading to hospitalization and mortality, whereas others are relatively unaffected.

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