Last April, the BioBam Team attended the Bio-IT World Conference & Expo in Boston and launched OmicsBox v.1.0. OmicsBox is BioBam’s latest offering, a bioinformatics software solution for the analysis of NGS data for different omics applications. OmicsBox provides four modules: The Functional Analysis module which includes the popular Blast2GO Functional Annotation software – BioBam’s flagship for functional genomics studies.
How to combine pairwise differential expression results with a functional annotation project in OmicsBox.
Once differential expression results are retrieved, it could be interesting to assign functional annotations to the differentially expressed genes and visualize the results in a single project. This is possible in OmicsBox.
In this use case, we will use the metagenomics tools included in OmicsBox to analyse the microbial communities in two different soda lakes from Brasil. The original study was carried out by Ana P. D. Andreote, et al., 2018 (doi: 10.3389/fmicb.2018.00244). Introduction Soda lakes are special ecosystems found across Africa, Europe, Asia, etc. These lakes have high levels of sodium
BioBam Bioinformatics S.L. Supported Project. Researchers: Nahid Hosseinzadeh Gharajeh Mohammad Amin Hejazi Mostafa Valizadeh Ebrahim Dorani Background and Project Overview: Dunaliella is a unicellular, halotolerant, biflagellate microalga which is already exploited as a platform in food, feed, aquaculture, biomedical, pharmaceutical, nutraceutical and cosmeceutical industries, specifically due to its high production of β-carotene and fine chemicals. There is a wide range
Whole genome functional annotation of Solanum lycopersicum with OmicsBox functional annotation module.
We attended PAG XXVII, the largest Ag-Genomics Meeting in the world. https://www.intlpag.org/2019 We launched OmicsBox Beta and gave away a whole bunch of free subscription. Here a few pics of the happy winners! Hopefully, they took advantage. The PAG 2019 Team with our new OmcisBox Booth :-). See you next year!
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