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Professional Bioinformatics Support
Our support and development team works closely together to take care of all the issues you might have, doesn’t matter if rather technical, about bioinformatics or biology.
You can reach us a email@example.com and we will do our best to answer all requests within one day. All comments and suggestions regarding our services are most welcome and a valuable source of information for us.
To share your experiences or to search for a specific solution within OmicsBox please log in to your BioBam Account here.
Thank you in advance for any future contributions.
This page offers example datasets to reproduce several uses cases with real-world datasets.
To explore all features and functions of the different modules you can user the following datasets ready to be opened within OmicsBox:
Use OmicsBox to explain basic bioinformatics concept like sequence alignments with BLAST, functional annotation with the Gene Ontology, public biological databases, NGS data analysis pipelines, etc.
If you are planning a teaching activity, please let us know and we may provide you with teaching presentations, practical sessions including exercises with solution and datasets.
Please write to us: firstname.lastname@example.org
We are here to help!
If you have any comments, suggestions or whatever trouble with OmicsBox, Blast2GO or any other product or service and want to get directly in touch with us, please write an e-mail to email@example.com
How to use the MLST App in OmicsboxThis video introduce the OmicsBox App which allows you to perform Multi-Locus Sequence Typing (MLST) analysis fast and easy in multiple files at the same time… Bioinformatics made easy!
OmicsBox PresentationOmicsBox is a bioinformatics software for the analysis of NGS data. This video shows the main features included in each module: functional analysis, transcriptomics, metagenomics and genome analysis.
How to use "Retrieve Blast Top-Hit" with OmicsBox/Blast2GOThis video shows how to use the "Retrieve Blast Top-Hit" tool in OmicsBox/Blast2GO to replace the Blasted sequences of a dataset with the top-hit ones found after a Blast search.
More details: https://www.biobam.com/how-to-improve-functional-annotations-using-retrieve-blast-top-hit/
RNA-Seq Features in OmicsBox/Blast2GOThis video shows new RNA-Seq features incorporated in Blast2GO 5: FastQ Preprocessing and Quality Assessment, de novo Transcriptome Assembly, Gene Expression Quantification, and Differential Expression Analysis.
Webinar: De-Novo Transcriptome Analysis the Cactus Root Development with OmicsBox/Blast2GOIn this webinar, the RNA-seq analysis for a de-novo transcriptome to obtain functional insights into the cactus root development with Blast2GO/OmicsBox is explained. More details: https://www.biobam.com/omicsbox
How to create Workflows with OmicsBox/Blast2GOThis video shows step-by-step how to create, configure and run a bioinformatics workflow in OmicsBox/Blast2GO.
More details here: http://manual.omicsbox.biobam.com/user-manual/workflows/
OmicsBox Website: https://www.biobam.com/omicsbox/
Estimating Transcript-Level Expression with Blast2GOThe Transcript-Level Quantification feature of Blast2GO allows to quantify the gene and isoform expression of RNA-seq datasets. This video shows step-by-step how to create a count table of raw reads and explains in detail the different concepts of expression quantification.
Quantify Expression with Blast2GOThe "Create Count Table" feature of Blast2GO allows to quantify the gene expression of RNA-seq datasets. This video shows step-by-step how to create a count table of raw reads and explains in detail different concepts of expression quantification.
Coding Potential Assesement Tool with Blast2GOThis video shows how to use the 'Coding Potential Assessment Tool' in Blast2GO. It helps to distinguish coding from non-coding transcripts and to detect new mRNA.