We are proud to announce that our I+D+i project “EVOLUTION OF THE COMPANY’S CLOUD SYSTEM TOWARDS AN ADVANCED ELASTIC PLATFORM FOR HIGH-PERFORMANCE COMPUTING AND MASSIVE SEQUENCING DATA PROCESSING” has received a grant from the Valencian Innovation Agency (AVI) in the line L3 Industrial Doctorate (innodocto) to support research staff of our company to carry out a doctoral thesis framed in
Introduction Given a new genome, one of the first and most important tasks is determining the structure of its protein-coding genes. Ab initio gene prediction algorithms play a critical role because they produce gene structures quickly, inexpensively, and remarkably reliable. In OmicsBox, the Eukaryotic Gene Finding application is based on AUGUSTUS, which is one of the most accurate programs for
Introduction Single-cell RNA sequencing (scRNA-seq) is a technology that aims to study the expression profiles of individual cells, in contrast with the typical bulk RNA sequencing that analyses the expression of large populations of cells together. scRNA-seq allows the identification of different cell types within the same sample, so it is possible to study tissues with more detail. One of
Introduction A pathway analysis is an import step in the final biological interpretation of experimental results in most omics studies. For non-model species however this often becomes a difficult endeavour due to the lack of functional information. The Combined Pathway Analysis tool allows to identify pathways from multiple pathway databases for any set of sequences. In combination with differential expression
BioBam announced today the release of OmicsBox 2.0. This new version of BioBam’s bioinformatics solution offers a user-friendly data analysis platform which allows to get from next generation sequencing reads to biological insights with ease. The software offers “out-of-the-box” data analysis and functional interpretation of genome, transcriptome and metagenome datasets for industry, academic and governmental research biologists. OmicsBox is used
With OmicsBox version 2.0 we introduce a new login dialog. This login is required for a more advanced subscription usage management. The login credentials are identical with the ones used for the BioBam Account website. If you do not yet have an BioBam Account you can easily create one from within OmicsBox via “SIGN UP”. If you forgot your password
This project shows how OmicsBox was used to functional annotate Moringa oleifera and to better understand the genome of the plant.
1. Introduction Juvenile rhesus macaques commonly suffer from idiopathic chronic diarrhea (ICD). This disease is characterized by inflammation of the colon and repeated bouts of diarrhea. It is a common cause of morbidity and mortality among macaques because it is unresponsive to drugs. The gut microbiome of macaques with ICD is characterized by abrupt changes when compared to healthy individuals.
OmicsBox was used to perform the complete transcriptome analysis of Allium sativum. Enrichment analysis revealed important metabolic pathways.
Tips And Tricks
Helpful Features, Tips and Tricks
Use Cases, Reviews, Tutorials
Product Tutorial, Quickstarts, New Features, etc.