1. Introduction Juvenile rhesus macaques commonly suffer from idiopathic chronic diarrhea (ICD). This disease is characterized by inflammation of the colon and repeated bouts of diarrhea. It is a common cause of morbidity and mortality among macaques because it is unresponsive to drugs. The gut microbiome of macaques with ICD is characterized by abrupt changes when compared to healthy individuals.
OmicsBox was used to perform the complete transcriptome analysis of Allium sativum. Enrichment analysis revealed important metabolic pathways.
We are proud to announce that BioBam has now achieved ISO/IEC 27001:2013 certification. ISO 27001 is the de-facto international security certification outlining best practices for information security management systems. This certification provides validation by a world-leading third party audit firm that BioBam meets strict security and compliance requirements, which makes BioBam one of the few bioinformatics solution providers to meet
We are happy to announce the latest version of OmicsBox 1.4, a very technical release of the OmicsBox base platform. We upgraded many internal libraries and updated to the latest version of many underlying software packages. These changes required a lot of code-refactoring and software testing to comply with all our internal security and quality standards. OmicsBox is now more
This project shows how OmicsBox was used to functional annotate Moringa oleifera and to better understand the genome of the plant.
We are happy to announce that a new version of OmicsBox has now been released. OmicsBox provides now Long-Read support for DNA-Seq data analysis pipelines. Several new tools and updates improve the transcriptomics module and a new statistical package in the Metagenomics Module allow to identify functional differences among microbiome samples.
Release OmicsBox version 1.2 (24th of October, 2019) We are happy to announce the following updates for the genome analysis module. New feature includes a new DNA-Seq de novo assembly strategy based on SPAdes.More details can be found below as well as in the online user manual and Genome Analysis Module website. DNA-Seq de Novo Assembly: SPAdes SPAdes (St Petersburg genome
Release OmicsBox version 1.2 (24th of October, 2019) We are happy to announce the following updates for the transcriptomics module. New features include Completeness Assessment and Predict Coding Regions. More details can be found below as well as in the online user manual and Transcriptomics Module website. Completeness Assessment The Completeness Assessment functionality provides quantitative measures for the assessment of transcriptome assembly completeness, based on
Release OmicsBox version 1.2 (24th of October, 2019) We are happy to announce the following updates for the metagenomics module. New feature include OTU Differential Abundance Testing and several new taxonomy plots: Chao1 Diversity, Rarefaction Curves and PCoA. More details can be found below as well as in the online user manual and Metagenomics Module website. New Taxonomy Statistics and Plots
Tips And Tricks
Helpful Features, Tips and Tricks
Use Cases, Reviews, Tutorials
Product Tutorial, Quickstarts, New Features, etc.