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Long Read Transcriptome with SQANTI3

Transcriptome Analysis with SQANTI3

Enrique Presa July 28, 2022

Transcriptome analysis is a challenging bioinformatic problem. In eukaryotic transcriptomes, alternative splicing and alternative polyadenylation are the most complex issues. Genome-wide analysis of alternative splicing has been studied with short-read RNA sequencing for a while. Nevertheless, this technology needs a subsequent assembly, which is difficult to be resolved in ambiguities in complex loci.

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OmicsBox Update Version 1.4

OmicsBox Update Version 1.4

Stefan Götz September 24, 2020

We are happy to announce the latest version of OmicsBox 1.4, a very technical release of the OmicsBox base platform. We upgraded many internal libraries and updated to the latest version of many underlying software packages. These changes required a lot of code-refactoring and software testing to comply with all our internal security and quality standards. OmicsBox is now more

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OmicsBox Update Version 1.3

OmicsBox Update Version 1.3

Stefan Götz April 29, 2020

We are happy to announce that the OmicsBox Update Version 1.3 has now been released. OmicsBox provides now Long-Read support for DNA-Seq data analysis pipelines. Several new tools and updates improve the transcriptomics module and a new statistical package in the Metagenomics Module allow to identify functional differences among microbiome samples.

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new version 5

Release Version 5.2

Mariana Monteiro August 8, 2018

(Release Date: 02/08/2018) We are happy to announce that Blast2GO 5.2 has now been released. This update makes our bioinformatics tool for straightforward functional genomics even better.Read below to learn which features and improvements are part of this release. Main features: Venn Diagrams that are fully customizable and allows multiple list comparisons FastQ Pre-Processing (Adapters, Quality, Length) with multiple trimming options.

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new version 5

Release Version 5

Stefan Götz March 16, 2017

Release Date: 13/01/2018) Just in time for the PAG Plant & Animal Genome Conference, we launched Blast2GO 5! This major release brings many new features. Most importantly, Blast2GO is now connected to the powerful BioBam Cloud, an AWS  architecture which gives a big boost to many analysis steps. Details below.  To upgrade from version 4 to 5 you have to

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New Blast2GO Version 3.3

Major Release Version 4

Stefan Götz September 13, 2016

(Release Date: 13/09/2016) We are very happy to announce the release of Blast2GO 4. This new version contains many new bioinformatic features like Differential Expression Analysis, Gene Finding or Gene Set Enrichment Analysis. Blast2GO will update automatically if activated. Otherwise please download the latest version online from here. Feedback, questions, as well as feature requests, are most welcome. Please write

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Blast2GO PRO Plugin for CLC bio Genomics Workbench Update

David Seide November 3, 2015

(Release Date: 3 November 2015) We released a new version (v.1.4.4) of our successful Blast2GO PRO Plugin for the CLC bio Genomics Workbench with new features and improvements. New features: Batch Rename your sequence names Set To Sense: Switch the sense of your sequences based on the best blast hit frame Longest ORF: Crop and convert sequences to longest ORF

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