fbpx

InterProScan with Blast2GO: How to make it work again

Activate development on Blast2GO was discontinued in 2018. All its functionality and more new features are now part of OmicsBox. Because Blast2GO is no longer updated, some of its functions may have stopped working because web services have changed or security certificates have expired, among other things. It is highly recommended to use OmicsBox instead of Blast2GO to benefit from

Read More »
A. galli

Reanalyzing the A. galli Transcriptomic Response to an Anthelmintic Drug with OmicsBox

In this analysis, we will reproduce a study carried out by Michaela M. Martis et al. in 2017 with OmicsBox. (http://doi.org/10.1371/journal.pone.0185182) Introduction Ascaridia galli is an intestinal parasite that infects a wide range of domestic birds. It is especially important in European farms, where it parasites laying hens and causes economic problems. The only available treatments are the Benzimidazole derivatives,

Read More »
Retrieve Top Blast Hit

How to change sequence names coming from Prokaryotic GeneFinding

When running GeneFinding the sequences receive a name with the predicted genes. The first part of the sequence identifier comes from the genome reference sequence name (de-novo assembly) and then a _orfx is appended, where x is a number. Sometimes this name is not useful to proceed with downstream analysis or compare results from other experiments. Is there any way

Read More »

Generate Gene Venn Diagram Representations with OmicsBox

What is a Gene Venn Diagram? A  Gene Venn Diagram is a graphical representation in the form of overlapping circles widely used to represent relationships among different genes (IDs).  High-throughput sequencing technologies generate large amounts of data sets coming from multiomics studies. At the transcriptomic level, differential expression analysis appears to be a highly important field of study in bioinformatics

Read More »
Search

Blog Categories:

News

Releases, Media, Announcements, etc.

Tips And Tricks

Mini-tutorials for common use-cases and to address frequently asked questions FAQs

Video Tutorials

Helpful Features, Tips and Tricks

Use Cases, Reviews, Tutorials

Product Tutorial, Quickstarts, New Features, etc.

Most Popular: