Metagenomic analysis of two soda lakes, with and without cyanobacterial bloom, with OmicsBox

In this use case, we will use the metagenomics tools included in OmicsBox to analyse the microbial communities in two different soda lakes from Brasil. The original study was carried out by Ana P. D. Andreote, et al., 2018 (doi: 10.3389/fmicb.2018.00244). Introduction Soda lakes are special ecosystems found across Africa, Europe, Asia, etc. These lakes have high levels of sodium

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A. galli

Reanalyzing the A. galli transcriptomic response to an anthelmintic drug with Blast2GO

In this analysis, we will reproduce the study that was carried out by Michaela M. Martis et al. in 2017 (doi: http://doi.org/10.1371/journal.pone.0185182) with Blast2GO. Introduction Ascaridia galli is an intestinal parasite which infects a wide range of domestic birds. It is especially important in European farms, where it parasites laying hens and cause some economic problems. The only available treatments are

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