taxonomic classification Archives

Metatranscriptomics Analysis of Macaques with Idiopathic Chronic Diarrhea (ICD)

David Seide November 23, 2020

1. Introduction Juvenile rhesus macaques commonly suffer from idiopathic chronic diarrhea (ICD). This disease is characterized by inflammation of the colon and repeated bouts of diarrhea. It is a common cause of morbidity and mortality among macaques because it is unresponsive to drugs. The gut microbiome of macaques with ICD is characterized by abrupt changes when compared to healthy individuals.

Metagenomic analysis of two soda lakes, with and without cyanobacterial bloom, with OmicsBox

Jesus Gutierrez March 23, 2020

In this use case we will use the metagenomics tools included in OmicsBox to analyze the microbial communities of two different soda lakes from Brazil. The original study was carried out by Ana P. D. Andreote, et al., 2018 (doi: 10.3389/fmicb.2018.00244). Introduction Soda lakes are special ecosystems found across Africa, Europe, Asia, etc. These lakes show high levels of sodium

Comparing taxonomic and functional compositions in metagenomic samples

Jesus Gutierrez March 17, 2020

Any annotation of metagenomic sequences, whether it involves pathways, clusters of orthologous genes, species or any other taxonomic or functional classification can be compared across samples. These analyses are encompassed within the Differential Abundance Analysis, and they require robust statistical approaches to achieve reliable results because metagenomics datasets often show under-sampling and low signal-to-noise ratios. All differential abundance analyses can

Metagenomic analysis of microbial communities with OmicsBox

Jesus Gutierrez October 22, 2019

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Metatranscriptomics Analysis of Macaques with Idiopathic Chronic Diarrhea (ICD)

Metagenomic analysis of two soda lakes, with and without cyanobacterial bloom, with OmicsBox

Comparing taxonomic and functional compositions in metagenomic samples

Metagenomic analysis of microbial communities with OmicsBox

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