Sarocladium oryzae

De novo genome assembly and annotation of sheath rot fungus Sarocladium oryzae with Blast2GO

This project reproduces a study carried out by Hittalmani S. et al. in 2016 about the S. oryzae fungus which causes sheath rot of rice. We used Blast2GO for the main analysis steps like the structural and functional annotation and analysis. (Original research paper: https://doi.org/10.1186/s12864-016-2599-0) 1.  Introduction Sheath rot disease caused by S. oryzae is an emerging threat to rice

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A. galli

Reanalyzing the A. galli transcriptomic response to an anthelmintic drug with Blast2GO

In this analysis, we will reproduce the study that was carried out by Michaela M. Martis et al. in 2017 (doi: http://doi.org/10.1371/journal.pone.0185182) with Blast2GO. Introduction Ascaridia galli is an intestinal parasite which infects a wide range of domestic birds. It is especially important in European farms, where it parasites laying hens and cause some economic problems. The only available treatments are

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How to perform a Gene Set Enrichment Analysis (GSEA)

This articles explains what a Gene Set Enrichment Analysis (GSEA) is, how it works and how it can be performed with OmicsBox. What is an enrichment analysis? An enrichment analysis is a bioinformatics method which identifies enriched or over-represented gene sets among a list of ranked genes. Gene sets are groups of genes that are functionally related according to current

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