functional annotation Archives - Page 2 of 4

COVID-19 Research Project in Brazil with OmicsBox Support

Mariana Monteiro March 31, 2020

BioBam Supported Project – with OmicsBox. Researchers: Luis Fernando Saraiva Macedo Timmers – Coordinator – Univates, Brazil Rafael Andrade Caceres – UFCSPA, Brazil Leandro de Mattos Pereira, UFRJ, Brazil Fernando Ruggiero Bachega – UFCSPA, Brazil Marcia Ines Goettert – Univates, Brazil Luiz Augusto Basso – PUCRS, Brazil Project: Currently, a large amount of data is available regarding the new SARS-CoV-2

Identification and Expression analysis of genes involved in endodormancy break in potato.

Mariana Monteiro March 31, 2020

BioBam Scholarship Supported Project – with OmicsBox. Researchers: Madhuri Gupta Dr. Pushpender Kumar Project and Overview At harvest, potato (Solanum tuberosum L.) tubers, one of the most important crops among vegetables, are dormant and will not sprout. Tubers contain shoot apical meristems on their surface with the ability to differenciate and grow into a new clone of the parent plant.

Comparing taxonomic and functional compositions in metagenomic samples

Jesus Gutierrez March 17, 2020

Any annotation of metagenomic sequences, whether it involves pathways, clusters of orthologous genes, species or any other taxonomic or functional classification can be compared across samples. These analyses are encompassed within the Differential Abundance Analysis, and they require robust statistical approaches to achieve reliable results because metagenomics datasets often show under-sampling and low signal-to-noise ratios. All differential abundance analyses can

Draft genome of a new Verminephrobacter eiseniae strain

Mariana Monteiro March 10, 2020

BioBam Scholarship Supported Project – with OmicsBox. Researchers: Mr. Arun Arumugaperumal Mr. Sayan Paul and Miss Saranya Lathakumari, PhD students Dr. Sudhakar Sivasubramaniam Abstract The earthworm Eisenia fetida has a symbiotic bacteria named Verminephrobacter eiseniae in its nephridia. A new strain of V. eiseniae msu was found out and the genome of the bacteria was found hidden in the genome

How to run Blast of the differential expressed genes?

Mariana Monteiro December 10, 2019

It is possible to run Blast only on the differential expressed genes and not on all the data with OmicsBox. One has to select only those sequences that have differential expressed genes in the OmicsBox project.First, make sure that the name of the sequences in the project match the ones from the differential expression results.

Multilocus Sequence Typing MLST Analysis Tool

Carlos Menor July 29, 2019

The Multilocus Sequence Typing Analysis Tool of OmicsBox (MLST) is a nucleotide sequence-based approach of characterizing isolates of bacterial species using the sequences of internal fragments of seven housekeeping genes. This video shows step-by-step how to analyze bacterial sequences with the MLST App in OmicsBox. As input, users can provide either DNA-Seq reads in FASTQ or contigs/scaffolds in FASTA format.

OmicsBox Video Introduction

Stefan Götz July 9, 2019

This 5-minute video provides a brief introduction to OmicsBox. All main features of all modules are introduced. OmicsBox is a bioinformatics Solution to easy your Omcis Data Analysis. Our workflows get you from raw reads tp insights fast and easy. The presented modules include Transcriptomics, Functional Annotation and Analysis with Blast2GO, the Genome Analysis Module as well as the Metagenomics

Transcriptome analysis of Acinetobacter baumannii cells under different conditions

Mariana Monteiro June 11, 2019

OmicsBox Supported Project Researchers: Background and Project Overview: A.baumannii, a nosocomial pathogen, ranks first in the WHO’s list of antibiotic-resistant priority pathogen. The problem of increasing frequency of multi-drug resistance in A. baumannii has been further compounded by tolerance to high concentration of antibiotics due to persister cells. Persister cells are phenotypic variants of normal cells that are formed in

BioBam at the 6th Microbiome R&D Forum in Rotterdam

David Seide June 4, 2019

In May, our colleague David Seide attended this year’s Microbiome & Probiotics in Rotterdam, the Netherlands organized by Global Engage. The event is a combination of 3 events, the 6th Microbiome R&D & Business Collaboration Forum, the 3rd Probiotics Congress and the Skin Microbiome & Cosmeceuticals Congress. This global microbiome and probiotics conference series brought together more than 300 industry,

Blog Categories:

News

Releases, Media, Announcements, etc.

Tips And Tricks

Mini-tutorials for common use-cases and to address frequently asked questions FAQs

Video Tutorials

Helpful Features, Tips and Tricks

Use Cases, Reviews, Tutorials

Product Tutorial, Quickstarts, New Features, etc.

COVID-19 Research Project in Brazil with OmicsBox Support

Identification and Expression analysis of genes involved in endodormancy break in potato.

Comparing taxonomic and functional compositions in metagenomic samples

Draft genome of a new Verminephrobacter eiseniae strain

How to run Blast of the differential expressed genes?

Multilocus Sequence Typing MLST Analysis Tool

OmicsBox Video Introduction

Transcriptome analysis of Acinetobacter baumannii cells under different conditions

BioBam at the 6th Microbiome R&D Forum in Rotterdam

Blog Categories:

Most Popular:

IsoQuant: Long-Read Isoform Identification and Quantification

OmicsBox 3.2 Release

Using BWA for DNA and RNA Alignment in OmicsBox

Differences Between GTF and GFF Files in Genomic Data Analysis

Tips to manage my OmicsBox subscription users

Company

OmicsBox

Blog

Info

Security