How to launch an Enrichment Analysis from pairwise differential expression results in OmicsBox?

How to launch an Enrichment Analysis from pairwise differential expression results in OmicsBox?

It is possible to directly run Functional Enrichment Analysis either GSEA or Fisher Exact Test from a pairwise differential expression analysis executed in OmicsBox in the Transcriptomics Module.
The list of interesting genes will be generated automatically by OmicsBox and there is no need to create it.

Run Fisher Exact Test from DiffExp (.b2g/.box) project:

On the toolbar, there is the option to run the Enrichment Analysis.

  1. Click the Fi icon to run the analysis.
  2. Select the test set, Up- or Down-regulated genes.
  3. Provide a .annot file which will be the reference set.

Run GSEA from DiffExp (.b2g/.box) project:

In this case, Blast2GO expects an ordered ranked list, which will be generated automatically and it will use the logFC values.

On the toolbar, it is possible to see the option to run the Gene Set Enrichment. 

  1. Click the Ge icon to run the analysis.
  2. Provide an annotated Blast2GOproject which will be the reference set.
  3. It is possible to filter out those genes with higher FDR.
Differential Expression table
Figure 1: Differential expression results table with the toolbar to run the enrichment analysis.

For additional information, please have a look at the user manual.

Differential Expression table
Share on facebook
Share on twitter
Share on linkedin

Blog Categories:

News

Releases, Media, Announcements, etc.

Use Cases, Reviews, Tutorials

Product Tutorial, Quickstarts, New Features, etc.

Video Tutorials

Helpful Features, Tips and Tricks

Tips And Tricks

Mini-tutorials for common use-cases and to address frequently asked questions FAQs

Most Popular:

Share on facebook
Facebook 0
Share on twitter
Twitter
Share on linkedin
LinkedIn 0
Share on email
Email
Share on print
Print

You are now leaving
to Blast2GO.com

Blast2GO is now part of OmicsBox.
If you are interested in a Blast2GO Subscription please see:
OmicsBox – Functional Analysis Module  

Welcome Back

Blast2GO is now part of OmicsBox