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Combined Pathway Analysis with OmicsBox

Introduction A pathway analysis is an import step in the final biological interpretation of experimental results in most omics studies. For non-model species however this often becomes a difficult endeavour due to the lack of functional information. The Combined Pathway Analysis tool allows to identify pathways from multiple pathway databases for any set of sequences. In combination with differential expression

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New OmicsBox Login Dialog

With OmicsBox version 2.0 we introduce a new login dialog. This login is required for a more advanced subscription usage management. The login credentials are identical with the ones used for the BioBam Account website. If you do not yet have an BioBam Account you can easily create one from within OmicsBox via “SIGN UP”. If you forgot your password

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BioBam accomplishes ISO 27001 certification

We are proud to announce that BioBam has now achieved ISO/IEC 27001:2013 certification. ISO 27001 is the de-facto international security certification outlining best practices for information security management systems. This certification provides validation by a world-leading third party audit firm that BioBam meets strict security and compliance requirements, which makes BioBam one of the few bioinformatics solution providers to meet

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Cloud Blast and Cloud Units: How to use resources wisely

This article describes how to run CloudBlast wisely. OmicsBox allows you to perform NCBI Blast searches using a cloud system for high-performance computing. This system runs jobs in parallel and autoscales depending on demand. To control usage we use so-called CloudUnits. These units represent computation time (cpu seconds) on the AWS infrastructure. At the moment only Blast and InterProScan consume

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OmicsBox Update Version 1.4

We are happy to announce the latest version of OmicsBox 1.4, a very technical release of the OmicsBox base platform. We upgraded many internal libraries and updated to the latest version of many underlying software packages. These changes required a lot of code-refactoring and software testing to comply with all our internal security and quality standards. OmicsBox is now more

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OmicsBox Update Version 1.3

We are happy to announce that a new version of OmicsBox has now been released. OmicsBox provides now Long-Read support for DNA-Seq data analysis pipelines. Several new tools and updates improve the transcriptomics module and a new statistical package in the Metagenomics Module allow to identify functional differences among microbiome samples.

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OmicsBox Video Introduction

This 5-minute video provides a brief introduction to OmicsBox. All main features of all modules are introduced. OmicsBox is a bioinformatics Solution to easy your Omcis Data Analysis. Our workflows get you  from raw reads tp insights fast and easy.  The presented modules include Transcriptomics, Functional Annotation and Analysis with Blast2GO, the Genome Analysis Module as well as the Metagenomics

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BioBam at the BioIT April 2019

Last April, the BioBam Team attended the Bio-IT World Conference & Expo in Boston and launched OmicsBox v.1.0. OmicsBox is BioBam’s latest offering, a bioinformatics software solution for the analysis of NGS data for different omics applications. OmicsBox provides four modules: The Functional Analysis module which includes the popular Blast2GO Functional Annotation software – BioBam’s flagship for functional genomics studies.

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Interview with Mariana Monteiro

Interview with Mariana Monteiro, a Bioinformatician, Sales and Customer Manager at BioBam. What I value the most about BioBam is that it is a very human company very close to its employees.

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